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    Structured Review

    New England Biolabs ecori sites
    Ecori Sites, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 15375 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ecori+sites/EcoRI/pmc13170675-222-24-29
    Average 99 stars, based on 15375 article reviews
    ecori sites - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Polymerase Chain Reaction:

    Article Title: The Yersinia pestis virulence effector YopM binds to a key regulatory site on the human pyrin death domain to inhibit inflammasome activation and effector-triggered immunity
    Article Snippet: .. All inserts were first PCR amplified then inserted into their respective vectors by either restriction cloning using BamHI and EcoRI sites or using the NEB Gibson Assembly kit according to the manufacturer’s recommendations. ..

    Article Title: A Wnt-induced conformational phospho-switch in DVL3 controls association with Frizzled receptors and Wnt/β-catenin signaling
    Article Snippet: hDVL3 segments of interest (IDR2, amino acids 335 to 396; DEP, amino acids 398 to 496; PDZ, amino acids 243 to 351; and PDZ-IDR2-DEP, amino acids 243 to 496) were amplified by polymerase chain reaction (PCR) and inserted into a pETM11 or pET-Z (IDR2) expression vectors via restriction digestion between the 5′-NcoI and 3′-KpnI sites, using BspHI (R0517, NEB) and KpnI (R3142S, NEB) restriction enzymes. .. The DNA segment encoding CK1δ or ε was amplified by PCR and inserted into pETM11 expression vector via restriction digestion between the 5′-NcoI and 3′-EcoRI sites, using NcoI (R0193L, NEB) and EcoRI (R3101S, NEB) restriction enzymes. ..

    Amplification:

    Article Title: The Yersinia pestis virulence effector YopM binds to a key regulatory site on the human pyrin death domain to inhibit inflammasome activation and effector-triggered immunity
    Article Snippet: .. All inserts were first PCR amplified then inserted into their respective vectors by either restriction cloning using BamHI and EcoRI sites or using the NEB Gibson Assembly kit according to the manufacturer’s recommendations. ..

    Article Title: A Wnt-induced conformational phospho-switch in DVL3 controls association with Frizzled receptors and Wnt/β-catenin signaling
    Article Snippet: hDVL3 segments of interest (IDR2, amino acids 335 to 396; DEP, amino acids 398 to 496; PDZ, amino acids 243 to 351; and PDZ-IDR2-DEP, amino acids 243 to 496) were amplified by polymerase chain reaction (PCR) and inserted into a pETM11 or pET-Z (IDR2) expression vectors via restriction digestion between the 5′-NcoI and 3′-KpnI sites, using BspHI (R0517, NEB) and KpnI (R3142S, NEB) restriction enzymes. .. The DNA segment encoding CK1δ or ε was amplified by PCR and inserted into pETM11 expression vector via restriction digestion between the 5′-NcoI and 3′-EcoRI sites, using NcoI (R0193L, NEB) and EcoRI (R3101S, NEB) restriction enzymes. ..

    Article Title: A combinatorial genetics approach reveals limits to redundancy within Plasmodium falciparum invasion ligand families
    Article Snippet: .. Amplified homology regions and recoded repair templates were inserted into the pCC1 plasmid (PlasmoGEM Sanger) between SpeI and EcoRI sites using Gibson assembly (NEB Hifi assembly kit). ..

    Cloning:

    Article Title: The Yersinia pestis virulence effector YopM binds to a key regulatory site on the human pyrin death domain to inhibit inflammasome activation and effector-triggered immunity
    Article Snippet: .. All inserts were first PCR amplified then inserted into their respective vectors by either restriction cloning using BamHI and EcoRI sites or using the NEB Gibson Assembly kit according to the manufacturer’s recommendations. ..

    Construct:

    Article Title: METTL1 interacts with XPO5 to modulate pre-miRNA export.
    Article Snippet: The cells were verified to be free from mycoplasma contamination using the LookOut Mycoplasma PCR Detection Kit (MP0035, Sigma–Aldrich). .. The METTL1-V5-APEX, EGFP-V5-APEX, and APEX2-NLS plasmids were constructed by inserting the coding sequence of full-length METTL1, enhanced green fluorescent protein (EGFP), and nuclear localization signal (NLS) into the NotI and EcoRI sites (New England Biolabs) of the modified MitoV5-APEX empty vector (Addgene, plasmid #124617) [ 17 ]. .. The Flag-HA-METTL1 plasmid was constructed by substituting the coding sequence of YTHDC1 in Flag-HA-YTHDC1 (Addgene, plasmid # 85167) with the full-length METTL1 sequence, utilizing EcoRI and XhoI (New England Biolabs).

    Article Title: SLIRP maintains energy metabolism homeostasis in colorectal cancer by stabilizing mitochondrial-encoded mRNAs.
    Article Snippet: BACKGROUND: Colorectal cancer (CRC) is a highly vascularised tumour often characterised by elevated oxidative phosphorylation (OXPHOS) activity, positioning OXPHOS as a potential metabolic vulnerability for targeted therapy.. SLIRP is an RNA-binding protein involved in the post-transcriptional regulation of mitochondrial gene expression.. However, its specific function and underlying mechanism in CRC remain poorly understood.

    Article Title: Comparative Genomic Analysis Identifies FleQ and GcbB as Virulence-Associated Factors in Pseudomonas syringae pv. tabaci Strains.
    Article Snippet: .. For deletion constructs, these flanking fragments were first cloned into pHSG396 (TaKaRa) via HindIII and EcoRI sites using the NEBuilder HiFi DNA Assembly Master Mix (New England Biolabs), after which the fleQ open reading frame was excised by inverse PCR to produce the ΔfleQ fragment. ..

    Article Title: Comparative Genomic Analysis Identifies FleQ and GcbB as Virulence‐Associated Factors in Pseudomonas syringae pv. tabaci Strains
    Article Snippet: .. For deletion constructs, these flanking fragments were first cloned into pHSG396 (TaKaRa) via HindIII and EcoRI sites using the NEBuilder HiFi DNA Assembly Master Mix (New England Biolabs), after which the fleQ open reading frame was excised by inverse PCR to produce the Δ fleQ fragment. ..

    Article Title: METTL1 interacts with XPO5 to modulate pre-miRNA export
    Article Snippet: The cells were verified to be free from mycoplasma contamination using the LookOut Mycoplasma PCR Detection Kit (MP0035, Sigma–Aldrich). .. The METTL1-V5-APEX, EGFP-V5-APEX, and APEX2-NLS plasmids were constructed by inserting the coding sequence of full-length METTL1, enhanced green fluorescent protein (EGFP), and nuclear localization signal (NLS) into the NotI and EcoRI sites (New England Biolabs) of the modified Mito-V5-APEX empty vector (Addgene, plasmid #124617) [ ]. .. The Flag-HA-METTL1 plasmid was constructed by substituting the coding sequence of YTHDC1 in Flag-HA-YTHDC1 (Addgene, plasmid # 85167) with the full-length METTL1 sequence, utilizing EcoRI and XhoI (New England Biolabs).

    Sequencing:

    Article Title: METTL1 interacts with XPO5 to modulate pre-miRNA export.
    Article Snippet: The cells were verified to be free from mycoplasma contamination using the LookOut Mycoplasma PCR Detection Kit (MP0035, Sigma–Aldrich). .. The METTL1-V5-APEX, EGFP-V5-APEX, and APEX2-NLS plasmids were constructed by inserting the coding sequence of full-length METTL1, enhanced green fluorescent protein (EGFP), and nuclear localization signal (NLS) into the NotI and EcoRI sites (New England Biolabs) of the modified MitoV5-APEX empty vector (Addgene, plasmid #124617) [ 17 ]. .. The Flag-HA-METTL1 plasmid was constructed by substituting the coding sequence of YTHDC1 in Flag-HA-YTHDC1 (Addgene, plasmid # 85167) with the full-length METTL1 sequence, utilizing EcoRI and XhoI (New England Biolabs).

    Article Title: METTL1 interacts with XPO5 to modulate pre-miRNA export
    Article Snippet: The cells were verified to be free from mycoplasma contamination using the LookOut Mycoplasma PCR Detection Kit (MP0035, Sigma–Aldrich). .. The METTL1-V5-APEX, EGFP-V5-APEX, and APEX2-NLS plasmids were constructed by inserting the coding sequence of full-length METTL1, enhanced green fluorescent protein (EGFP), and nuclear localization signal (NLS) into the NotI and EcoRI sites (New England Biolabs) of the modified Mito-V5-APEX empty vector (Addgene, plasmid #124617) [ ]. .. The Flag-HA-METTL1 plasmid was constructed by substituting the coding sequence of YTHDC1 in Flag-HA-YTHDC1 (Addgene, plasmid # 85167) with the full-length METTL1 sequence, utilizing EcoRI and XhoI (New England Biolabs).

    Modification:

    Article Title: METTL1 interacts with XPO5 to modulate pre-miRNA export.
    Article Snippet: The cells were verified to be free from mycoplasma contamination using the LookOut Mycoplasma PCR Detection Kit (MP0035, Sigma–Aldrich). .. The METTL1-V5-APEX, EGFP-V5-APEX, and APEX2-NLS plasmids were constructed by inserting the coding sequence of full-length METTL1, enhanced green fluorescent protein (EGFP), and nuclear localization signal (NLS) into the NotI and EcoRI sites (New England Biolabs) of the modified MitoV5-APEX empty vector (Addgene, plasmid #124617) [ 17 ]. .. The Flag-HA-METTL1 plasmid was constructed by substituting the coding sequence of YTHDC1 in Flag-HA-YTHDC1 (Addgene, plasmid # 85167) with the full-length METTL1 sequence, utilizing EcoRI and XhoI (New England Biolabs).

    Article Title: METTL1 interacts with XPO5 to modulate pre-miRNA export
    Article Snippet: The cells were verified to be free from mycoplasma contamination using the LookOut Mycoplasma PCR Detection Kit (MP0035, Sigma–Aldrich). .. The METTL1-V5-APEX, EGFP-V5-APEX, and APEX2-NLS plasmids were constructed by inserting the coding sequence of full-length METTL1, enhanced green fluorescent protein (EGFP), and nuclear localization signal (NLS) into the NotI and EcoRI sites (New England Biolabs) of the modified Mito-V5-APEX empty vector (Addgene, plasmid #124617) [ ]. .. The Flag-HA-METTL1 plasmid was constructed by substituting the coding sequence of YTHDC1 in Flag-HA-YTHDC1 (Addgene, plasmid # 85167) with the full-length METTL1 sequence, utilizing EcoRI and XhoI (New England Biolabs).

    Plasmid Preparation:

    Article Title: METTL1 interacts with XPO5 to modulate pre-miRNA export.
    Article Snippet: The cells were verified to be free from mycoplasma contamination using the LookOut Mycoplasma PCR Detection Kit (MP0035, Sigma–Aldrich). .. The METTL1-V5-APEX, EGFP-V5-APEX, and APEX2-NLS plasmids were constructed by inserting the coding sequence of full-length METTL1, enhanced green fluorescent protein (EGFP), and nuclear localization signal (NLS) into the NotI and EcoRI sites (New England Biolabs) of the modified MitoV5-APEX empty vector (Addgene, plasmid #124617) [ 17 ]. .. The Flag-HA-METTL1 plasmid was constructed by substituting the coding sequence of YTHDC1 in Flag-HA-YTHDC1 (Addgene, plasmid # 85167) with the full-length METTL1 sequence, utilizing EcoRI and XhoI (New England Biolabs).

    Article Title: A combinatorial genetics approach reveals limits to redundancy within Plasmodium falciparum invasion ligand families
    Article Snippet: .. Amplified homology regions and recoded repair templates were inserted into the pCC1 plasmid (PlasmoGEM Sanger) between SpeI and EcoRI sites using Gibson assembly (NEB Hifi assembly kit). ..

    Article Title: METTL1 interacts with XPO5 to modulate pre-miRNA export
    Article Snippet: The cells were verified to be free from mycoplasma contamination using the LookOut Mycoplasma PCR Detection Kit (MP0035, Sigma–Aldrich). .. The METTL1-V5-APEX, EGFP-V5-APEX, and APEX2-NLS plasmids were constructed by inserting the coding sequence of full-length METTL1, enhanced green fluorescent protein (EGFP), and nuclear localization signal (NLS) into the NotI and EcoRI sites (New England Biolabs) of the modified Mito-V5-APEX empty vector (Addgene, plasmid #124617) [ ]. .. The Flag-HA-METTL1 plasmid was constructed by substituting the coding sequence of YTHDC1 in Flag-HA-YTHDC1 (Addgene, plasmid # 85167) with the full-length METTL1 sequence, utilizing EcoRI and XhoI (New England Biolabs).

    Knockdown:

    Article Title: SLIRP maintains energy metabolism homeostasis in colorectal cancer by stabilizing mitochondrial-encoded mRNAs.
    Article Snippet: BACKGROUND: Colorectal cancer (CRC) is a highly vascularised tumour often characterised by elevated oxidative phosphorylation (OXPHOS) activity, positioning OXPHOS as a potential metabolic vulnerability for targeted therapy.. SLIRP is an RNA-binding protein involved in the post-transcriptional regulation of mitochondrial gene expression.. However, its specific function and underlying mechanism in CRC remain poorly understood.

    Expressing:

    Article Title: A Wnt-induced conformational phospho-switch in DVL3 controls association with Frizzled receptors and Wnt/β-catenin signaling
    Article Snippet: hDVL3 segments of interest (IDR2, amino acids 335 to 396; DEP, amino acids 398 to 496; PDZ, amino acids 243 to 351; and PDZ-IDR2-DEP, amino acids 243 to 496) were amplified by polymerase chain reaction (PCR) and inserted into a pETM11 or pET-Z (IDR2) expression vectors via restriction digestion between the 5′-NcoI and 3′-KpnI sites, using BspHI (R0517, NEB) and KpnI (R3142S, NEB) restriction enzymes. .. The DNA segment encoding CK1δ or ε was amplified by PCR and inserted into pETM11 expression vector via restriction digestion between the 5′-NcoI and 3′-EcoRI sites, using NcoI (R0193L, NEB) and EcoRI (R3101S, NEB) restriction enzymes. ..

    Clone Assay:

    Article Title: Comparative Genomic Analysis Identifies FleQ and GcbB as Virulence-Associated Factors in Pseudomonas syringae pv. tabaci Strains.
    Article Snippet: .. For deletion constructs, these flanking fragments were first cloned into pHSG396 (TaKaRa) via HindIII and EcoRI sites using the NEBuilder HiFi DNA Assembly Master Mix (New England Biolabs), after which the fleQ open reading frame was excised by inverse PCR to produce the ΔfleQ fragment. ..

    Article Title: Comparative Genomic Analysis Identifies FleQ and GcbB as Virulence‐Associated Factors in Pseudomonas syringae pv. tabaci Strains
    Article Snippet: .. For deletion constructs, these flanking fragments were first cloned into pHSG396 (TaKaRa) via HindIII and EcoRI sites using the NEBuilder HiFi DNA Assembly Master Mix (New England Biolabs), after which the fleQ open reading frame was excised by inverse PCR to produce the Δ fleQ fragment. ..

    Inverse PCR:

    Article Title: Comparative Genomic Analysis Identifies FleQ and GcbB as Virulence-Associated Factors in Pseudomonas syringae pv. tabaci Strains.
    Article Snippet: .. For deletion constructs, these flanking fragments were first cloned into pHSG396 (TaKaRa) via HindIII and EcoRI sites using the NEBuilder HiFi DNA Assembly Master Mix (New England Biolabs), after which the fleQ open reading frame was excised by inverse PCR to produce the ΔfleQ fragment. ..

    Article Title: Comparative Genomic Analysis Identifies FleQ and GcbB as Virulence‐Associated Factors in Pseudomonas syringae pv. tabaci Strains
    Article Snippet: .. For deletion constructs, these flanking fragments were first cloned into pHSG396 (TaKaRa) via HindIII and EcoRI sites using the NEBuilder HiFi DNA Assembly Master Mix (New England Biolabs), after which the fleQ open reading frame was excised by inverse PCR to produce the Δ fleQ fragment. ..



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